This is a list of , or military units from the state of Missouri which fought for the Confederacy in the American Civil War .
- 1st Infantry
- 1st and 4th (Consolidated) Infantry
- 2nd Infantry
- 2nd and 6th (Consolidated) Infantry
- 3rd Infantry
- 3rd and 5th (Consolidated) Infantry
- 4th Infantry
- 5th Infantry
- 6th Infantry
- 7th Infantry
- 8th Infantry
- 9th Infantry
- 10th Infantry
- 11th Infantry
- 12th Infantry
- 16th Infantry
- Clark's Regiment, Infantry
- Winston's Regiment, Infantry
- 1st Battalion, Infantry
- 3rd Battalion, Infantry
- 8th Battalion, Infantry
- Perkins' Battalion, Infantry
- 9th Battalion, Sharp Shooters
- Searcy's Battalion, Sharp Shooters
- 1st Cavalry
- 1st and 3d (Consolidated) Cavalry
- 1st Northeast Cavalry
- 2nd Cavalry
- 2nd Northeast Cavalry (Franklin's Regiment)
- 3rd Cavalry
- 4th Cavalry
- 5th Cavalry
- 6th Cavalry
- 7th Cavalry
- 8th Cavalry
- 9th (Elliott's) Cavalry
- 10th Cavalry
- 12th Cavalry
- 15th Cavalry
- Coffee's Regiment, Cavalry
- Coleman's Regiment, Cavalry
- Freeman's Regiment, Cavalry
- Fristoe's Regiment, Cavalry
- Hunter's Regiment, Cavalry
- Jackman's Regiment, Cavalry
- Lawther's Temporary Regiment, Dismounted Cavalry
- Poindexter's Regiment, Cavalry
- Slayback's Regiment, Cavalry
- Williams' Regiment, Cavalry
- Wood's Regiment, Cavalry
- 3rd Battalion, Cavalry
- Clardy's Battalion, Cavalry
- Davies' Battalion, Cavalry
- Ford's Battalion, Cavalry
- Preston's Battalion, Cavalry
- Schnabel's Battalion, Cavalry
- Shaw's Battalion, Cavalry
- Snider's Battalion, Cavalry
- Beck's Company, Cavalry
- Hick's Company, Cavalry
- Hobbs' Company, Cavalry
- Stallard's Company, Cavalry
- Woodson's Company, Cavalry
- Boone's Regiment, Mounted Infantry
- 1st Battery, Light Artillery
- 1st Field Battery, Light Artillery
- 2nd Field Battery, Light Artillery
- 3rd Battery, Light Artillery
- 3rd Field Battery, Light Artillery
- 4th (Harris') Field Battery, Light Artillery
- 13th Battery, Light Artillery
- Farris' Battery, Light Artillery (Clark Artillery)
- Hamilton's (Prairie Gun) Battery, Light Artillery
- Barret's Company, Light Artillery
- Bledsoe's Company, Light Artillery
- Bledsoe's Company, Artillery
- Landis' Company, Light Artillery
- Lowe's Company, Artillery (Jackson Battery)
- McDonald's Company, Light Artillery
- Parson's Company, Light Artillery
- von Phul's Company, Light Artillery
- Walsh's Company, Light Artillery
- Dorsey's Regiment
- Douglas' Regiment
- Lawther's Partisan Rangers
- Miscellaneous, Missouri
- Parsons' Regiment
- Phelan's Regiment
- Quantrill's Company
- State Guard
- Thompson's Command
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