Some of his work is published in the book Quest For The Historical Muhammad edited by Ibn Warraq .
- ''Greek philosophical terms; a historical lexicon'', F. E. Peters, New York University Press, New York (1967)
- ''Aristotle and the Arabs; the Aristotelian tradition in Islam'', F. E. Peters, New York University Press, New York (1968)
- ''Aristoteles Arabus. The oriental translations and commentaries of the Aristotelian Corpus'', F. E. Peters, E. J. Brill, Leiden (1968)
- ''Harvest of Hellenism; a history of the Near East from Alexander the Great to the triumph of Christianity'', F. E. Peters, Simon and Schuster, New York, ISBN 0671206583 (1971)
- ''Allah's Commonwealth; a history of Islam in the Near East'', 600-1100 A.D., F. E. Peters, Simon and Schuster, New York, ISBN 0671215647 (1973)
- ''Ours, the making and unmaking of a Jesuit'', F. E. Peters, Penguin Books, Harmondsworth, Middlesex, England; New York, N.Y., ISBN 014006317X (1982)
- ''Jerusalem: holy city/holy places'', F. E. Peters, New York University, Hagop Kevorkian Center for Near Eastern Studies, New York, N.Y. (1983)
- ''Jerusalem: the holy city in the eyes of chroniclers, visitors, pilgrims, and prophets from the days of Abraham to the beginnings of modern times'', F. E. Peters, Princeton University Press, Princeton, N.J., ISBN 0691073007 (1985)
- ''Distant shrine: the Islamic centuries in Jerusalem'', F. E. Peters, AMS Press, New York, ISBN 0404616291 (1993)
- ''Hajj: the Muslim pilgrimage to Mecca and the holy places'', F.E. Peters, Princeton University Press, Princeton, N.J., ISBN 0691021201 (1994)
- ''Jerusalem and Mecca: the typology of the holy city in the Near East'', F. E. Peters, New York University Press, New York, ISBN 081476598X (1986)
- ''Arabs and Arabia on the eve of Islam'', edited by F. E. Peters, Aldershot, Brookfield, Vt., ISBN 0860787028 (1999)
- ''Reader on classical Islam'', edited by F. E. Peters, Princeton University Press, Princeton, N.J., ISBN 0691033943 (1994) {Link without Title}
- ''Judaism, Christianity, and Islam: The Classical Texts and Their Interpretation, Volume I: From Convenant to Community'', F. E. Peters, Princeton University Press, Princeton, N.J., ISBN 0691020442 (1990)
- ''Judaism, Christianity, and Islam: The Classical Texts and Their Interpretation, Volume II: The Word and the Law and the People of God'', F. E. Peters, Princeton University Press, Princeton, N.J., ISBN 069102054X (1990)
- ''Judaism, Christianity, and Islam: The Classical Texts and Their Interpretation, Volume III: The Works of the Spirit'', F. E. Peters, Princeton University Press, Princeton, N.J., ISBN 0691020558 (1990)
- '' Muhammad And The Origins Of Islam (book) '', F. E. Peters, State University of New York Press, Albany, ISBN 0791418758 (1994)
- ''Mecca: a literary history of the Muslim Holy Land'', F. E. Peters, Princeton University Press, Princeton, N.J., ISBN 069103267X (1994)
- ''The Monotheists: Jews, Christians, and Muslims in Conflict and Competition'', Volume I: The Peoples of God, F. E. Peters, Princeton University Press, Princeton, N.J., ISBN 0691114609 (1994)
- ''The Monotheists: Jews, Christians, and Muslims in Conflict and Competition'', Volume II: The Words and Will of God, F. E. Peters, Princeton University Press, Princeton, N.J., ISBN 0691114617 (1994)
- ''Judaism, Christianity and Islam: the monotheists'', F. E. Peters, Recorded Books, Prince Frederick, MD, ISBN 1402539002 (2003)
- ''Islam, a guide for Jews and Christians'', F. E. Peters, (2003)
- ''Jerusalem: the contested city'', Frank E. Peters, Recorded Books, Prince Frederick, MD, ISBN 1402539096 (2003)
- ''Children of Abraham: Judaism, Christianity, Islam'', F. E. Peters, ; with a foreword by John L. Esposito , Princeton University Press, Princeton, N.J., ISBN 0691072671 (2004) {Link without Title}
- F. E. Peter's entry with the Library Of Congress catalogue
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