Animal Breeding & Genetics, Wageningen
Provides programmes in the area of animal breeding including SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and GENEFLOW. Free software for WIN.
ASReml Cookbook
Statistical software designed for fitting mixed models for large datasets. Contains commented code for univariate and multivariate analysis including longitudinal and spatial analysis.
Big Bench Software
Commercial software for the management of transgenic mouse colonies. Windows and Mac OS X. Demo version available.
CircuSoft Instrumentation LLC
Transgenic mouse colony tracking and management software for the Mac and Windows. Includes demo software and manuals.
DESIRE
Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN program is also contained in GENUP.
DFREML
Meyer's variance component estimation software for animal breeding is free for research purposes, available for UNIX, DOS and FORTRAN source code.
DRIFT
Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free.
Finnish Forest Genetics and Tree Breeding
Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species.
GeneFlow Inc
This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented towards plant breeding. Website does not give prices or operating systems supported.
Genetic Analysis Software
Extensive list of linkage, mapping and pedigree software with links for obtaining copies.
GeneticStudio
A complete suite of population genetic analysis programs for Mac. Includes plug-in modules. Not updated since 2001.
Genup
Free software to assist learning quantitative genetic concepts (animal breeding) for WIN.
Grain Crops Breeding
Access to MQTL (simplified composite QTL mapping), MSIM and GREGOR (genetic simulation) and KIN (kinship coefficients). DOS, UNIX and PASCAL source code is free. From McGill University .
Ignacy Misztal
Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source is free for research use.
Ivory Tower Software
Genetics and breeding simulation software allows students to breed virtual organisms with 2000 genes. The site gives access to a free demo version of the WIN program.
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