Category Index of Biology

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Biology

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Genometric Analysis Simulation Program (GASP)
Program to generate samples of family data based on user specified genetic models.

Haplo
Fortran 77 code by Daniel E. Weeks and Kenneth Lange for haplotyping with computation of conditional probabilities.

LIPED
Fortran program by Jurg Ott to carry out genetic linkage analysis -- estimate the recombination fraction, by calculating pedigree likelihoods for various assumed values of the recombination fraction. Only two loci can be handled at a time, for example, a disease locus and a marker locus.

Naccess
Fortran program to calculate the accessible area of a molecule from a PDB (Protein Data Bank) format file. It can calculate the atomic and residue accessiblities for both proteins and nucleic acids. Free for academics.

Vadar
Structural analysis of protein coordinate data.

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Category Index of Biology